20 Minute Keto Pumpkin Muffins That Taste Like Autumn
Imagine biting into a warm, perfectly spiced muffin that tastes like autumn in every bite, yet won’t kick you out of ketosis! These keto pumpkin muffins are incredibly moist, bursting with cozy cinnamon and nutmeg flavors, and ready in just 25 minutes.
Did you know that pumpkin was once recommended as a remedy for freckles and snake bites? Today, we’re using this superfood to create guilt-free treats that satisfy your sweet tooth while keeping your carb count low.
What makes these muffins truly special is their amazing texture – so fluffy and tender, you’d never guess they’re grain-free and sugar-free.
What Are Keto Pumpkin Muffins?
Ever wondered why we call them “muffins” when they’re basically cupcakes in disguise? These delightful keto pumpkin muffins are the perfect marriage of fall flavors and low-carb living. They’re like little clouds of pumpkin spice happiness that won’t sabotage your ketogenic lifestyle.
You know what they say – the way to a person’s heart is through their stomach, and these muffins will definitely steal hearts! Ready to fall in love with fall flavors all over again?

Why You’ll Love These Keto Pumpkin Muffins
Rich Pumpkin Flavor That Satisfies
These muffins deliver an incredible burst of autumn flavor in every bite. The natural sweetness of pumpkin puree combines perfectly with warm spices like cinnamon, nutmeg, and a hint of vanilla. Each muffin is incredibly moist and tender, with a texture so perfect you’ll forget they’re keto-friendly.
Budget-Friendly Homemade Goodness
Making these keto pumpkin muffins at home saves you serious money compared to buying expensive low-carb bakery items. A single batch yields 12 delicious muffins for just a few dollars. Plus, you control every ingredient, ensuring quality and freshness.
Versatile and Family-Friendly
These muffins work perfectly as a quick breakfast, satisfying snack, or guilt-free dessert. Kids and non-keto family members love them too! They’re similar to our popular keto cinnamon muffins but with that irresistible pumpkin twist that makes them perfect for fall.
Ready to transform your kitchen into a cozy autumn bakery? Let’s get baking!
How to Make Keto Pumpkin Muffins
Quick Overview
These keto pumpkin muffins are surprisingly simple to make and require no special techniques. The secret lies in using quality almond flour and the perfect blend of spices.
Prep Time: 10 minutes
Cook Time: 20-25 minutes
Total Time: 35 minutes
Servings: 12 muffins
Net Carbs: 3g per muffin
Key Ingredients for Keto Pumpkin Muffins
Dry Ingredients:
- 2 cups super fine almond flour
- 1/2 cup erythritol (or preferred keto sweetener)
- 1 teaspoon baking powder
- 1/2 teaspoon baking soda
- 1 teaspoon ground cinnamon
- 1/2 teaspoon ground nutmeg
- 1/4 teaspoon ground ginger
- 1/4 teaspoon ground cloves
- 1/2 teaspoon salt
Wet Ingredients:
- 3/4 cup pumpkin puree (not pumpkin pie filling)
- 3 large eggs, room temperature
- 1/3 cup melted coconut oil or butter
- 1/4 cup unsweetened almond milk
- 1 teaspoon vanilla extract
Optional Toppings:
- Sugar-free chocolate chips
- Chopped pecans
- Pumpkin seeds

Step-by-Step Instructions
Step 1: Prepare Your Kitchen Preheat your oven to 350°F (175°C). Line a 12-cup muffin tin with paper liners or grease well with coconut oil. This prevents sticking and makes removal easy.
Step 2: Mix Dry Ingredients In a large bowl, whisk together almond flour, erythritol, baking powder, baking soda, cinnamon, nutmeg, ginger, cloves, and salt. Make sure there are no lumps, especially in the almond flour.
Step 3: Combine Wet Ingredients In another bowl, whisk together pumpkin puree, eggs, melted coconut oil, almond milk, and vanilla extract until smooth and well combined. The mixture should be creamy and uniform.
Step 4: Create the Batter Pour the wet ingredients into the dry ingredients. Gently fold together until just combined. Don’t overmix – this can make muffins tough. The batter should be thick but scoopable.
Step 5: Fill and Bake Divide batter evenly among muffin cups, filling each about 2/3 full. Bake for 20-25 minutes, or until a toothpick inserted in the center comes out clean or with just a few moist crumbs.
Step 6: Cool and Enjoy Let muffins cool in the pan for 5 minutes, then transfer to a wire rack to cool completely. This prevents them from becoming soggy on the bottom.
What to Serve Keto Pumpkin Muffins With
These versatile muffins pair beautifully with morning coffee or afternoon tea. Try them with:
- Hot beverages: Bulletproof coffee, chai tea, or sugar-free pumpkin spice latte
- Spreads: Cream cheese, almond butter, or sugar-free maple syrup
- Breakfast sides: Scrambled eggs, bacon, or Greek yogurt
- Dessert options: Sugar-free whipped cream or a drizzle of melted dark chocolate
Top Tips for Perfecting Keto Pumpkin Muffins
Choose the Right Pumpkin Puree
Always use pure pumpkin puree, not pumpkin pie filling. Check the label – it should only contain pumpkin. Libby’s is a reliable brand that works perfectly.
Room Temperature Ingredients Work Best
Bring eggs and almond milk to room temperature before mixing. This helps create a smoother batter and more even texture in your finished muffins.
Don’t Overmix the Batter
Fold ingredients together gently until just combined. Overmixing develops the proteins in almond flour, creating dense, tough muffins instead of light, fluffy ones.

Test for Doneness Properly
Insert a toothpick in the center of a muffin. It should come out clean or with just a few moist crumbs. Overbaking will dry out your muffins.
Sweetener Substitutions
You can substitute erythritol with monk fruit sweetener (use 1/4 cup), stevia (use 1 teaspoon), or xylitol (same amount as erythritol). Each will slightly change the texture and sweetness level.
Storing and Reheating Tips
Room Temperature Storage: Store muffins in an airtight container for up to 3 days. Place parchment paper between layers to prevent sticking.
Refrigeration: Keep muffins fresh for up to 1 week in the refrigerator. Store in an airtight container or wrap individually in plastic wrap.
Freezing Instructions: These muffins freeze beautifully for up to 3 months. Wrap each muffin individually in plastic wrap, then place in a freezer bag. Label with the date.
Reheating Methods:
- Microwave: 15-20 seconds for refrigerated muffins, 30-45 seconds for frozen
- Oven: 5 minutes at 300°F for the perfect warm-from-the-oven taste
- Air fryer: 2-3 minutes at 300°F for a slightly crispy exterior
Nutritional Information
| Nutrient | Per Muffin |
|---|---|
| Calories | 165 |
| Total Carbs | 6g |
| Fiber | 3g |
| Net Carbs | 3g |
| Protein | 6g |
| Fat | 14g |
| Sugar | 2g |
Nutritional values are approximate and may vary based on specific ingredients used.
Frequently Asked Questions
Can I use coconut flour instead of almond flour?
Coconut flour absorbs much more liquid than almond flour. If substituting, use only 1/2 cup coconut flour and add an extra egg. The texture will be slightly different but still delicious.
Why are my muffins dense and heavy?
This usually happens from overmixing the batter or using old baking powder. Mix ingredients until just combined, and make sure your baking powder is fresh (replace every 6 months).
Can I make these muffins dairy-free?
Absolutely! Use coconut oil instead of butter and ensure your chocolate chips (if using) are dairy-free. The recipe is naturally dairy-free when made with coconut oil.
How can I make these muffins sweeter?
Add an extra 2-3 tablespoons of your preferred keto sweetener, or try adding a few drops of liquid stevia. You can also add sugar-free chocolate chips for extra sweetness.
Can I double this recipe?
Yes! Double all ingredients and use two 12-cup muffin tins. Baking time remains the same, but you may need to rotate pans halfway through for even baking.
What’s the best way to measure almond flour?
Spoon almond flour into measuring cups and level off with a knife. Don’t pack it down. For most accurate results, use a kitchen scale (1 cup almond flour = 96g).
Can I add other mix-ins?
Definitely! Try sugar-free chocolate chips, chopped pecans, walnuts, or sugar-free butterscotch chips. Add up to 1/2 cup of mix-ins without affecting the recipe’s structure.
Why did my muffins sink in the middle?
This usually indicates expired leavening agents or opening the oven door too early. Make sure baking powder is fresh and avoid opening the oven door for the first 15 minutes of baking.
Bonus Tips for Keto Baking Success
Understanding Keto Sweeteners
Different keto sweeteners behave differently in baking. Erythritol provides the best texture and doesn’t have a strong aftertaste. Monk fruit sweetener is much sweeter, so you’ll need less. Stevia can have a bitter aftertaste if you use too much.
The Importance of Quality Almond Flour
Not all almond flours are created equal. Super fine almond flour (like Kirkland or Blue Diamond brands) creates the lightest texture. Avoid almond meal, which has larger particles and creates denser muffins.
Making Your Own Pumpkin Spice Blend
Create a custom blend with 4 tablespoons cinnamon, 2 tablespoons ginger, 1 tablespoon nutmeg, 1 tablespoon allspice, and 1 tablespoon cloves. Store in an airtight container for up to one year.
These keto pumpkin muffins prove that following a ketogenic lifestyle doesn’t mean sacrificing the flavors you love. With their perfect spice balance, incredible moistness, and only 3 net carbs per serving, they’re destined to become your new fall favorite.
Whether you’re meal prepping for busy mornings or treating yourself to a cozy afternoon snack, these muffins deliver bakery-quality taste right from your own kitchen.
The best part? Your non-keto family and friends will never guess these delicious treats are low-carb. They’re proof that healthy eating can be absolutely delicious.
So grab your mixing bowls, preheat that oven, and get ready to fill your home with the incredible aroma of homemade pumpkin spice muffins!
